MirGeneDB 3.0

MirGeneDB ID

Bpl-Mir-87-o7

Family name MIR-87 (all species)
Seed UGAGCAA
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Bko-Mir-87-o7  Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) Brachionus
Node of Origin (family) Protostomia
Genome context
(Bpl_ASM1027981)
QEOQ01000573.1: 507118-507197 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAGUCGAAUAAAAGUAAAUUUAACUAUUGCACUUGAAACAUUGUUCAAACCUUAGUUAGAAUGCUAAAAUAGAUAGCUAUUUUCAGGUGAGCAAAGUUUCAAGUGUGUUUGUUAAAAUUUAGAUCAUCAUCAGCAAUA
Get precursor sequence
Structure
        10        20          30        40        50        60        70
UUCAGUCGAAUAAAAGUAAA--|     UAU            A      AA   UUAGUUAGAAUGCUAA 
                      UUUAAC   UGCACUUGAAAC UUGUUC  ACC                A
                      AAAUUG   GUGUGAACUUUG AACGAG  UGG                A
AUAACGACUACUACUAGAUUUA^     UUU            A      --   ACUUUUAUCGAUAGAU 
.       130       120       110       100          90        80
Deep sequencing
Go to detailed chart
CommentIt is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bpl-Mir-87-o7_5p* (predicted)

mirBase accessionNone
Sequence
0- GCACUUGAAACAUUGUUCAAACC -23
Get sequence
Mature sequence

Bpl-Mir-87-o7_3p

mirBase accessionNone
Sequence
58- GUGAGCAAAGUUUCAAGUGUGU -80
Get sequence