MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-199-P1-v2

Family name MIR-199 (all species)
Seed ACAGUAG
Species Cow (Bos taurus)
MiRBase ID bta-mir-199a-1
Paralogues Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v3  Bta-Mir-199-P2-v1  Bta-Mir-199-P2-v2  Bta-Mir-199-P2-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cja-Mir-199-P1-v1  Cja-Mir-199-P1-v2  Cja-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Dre-Mir-199-P1a-v1  Dre-Mir-199-P1a-v2  Dre-Mir-199-P1a-v3  Eca-Mir-199-P1-v1  Eca-Mir-199-P1-v2  Eca-Mir-199-P1-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Gmo-Mir-199-P1b-v1  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Laf-Mir-199-P1-v1  Laf-Mir-199-P1-v2  Laf-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1a-v2  Mal-Mir-199-P1a-v3  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P1b-v2  Mal-Mir-199-P1b-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmr-Mir-199-P1-v1  Mmr-Mir-199-P1-v2  Mmr-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Neu-Mir-199-P1-v1  Neu-Mir-199-P1-v2  Neu-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pab-Mir-199-P1-v1  Pab-Mir-199-P1-v2  Pab-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Tni-Mir-199-P1b-v1  Tni-Mir-199-P1b-v2  Tni-Mir-199-P1b-v3  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1c-v2  Xla-Mir-199-P1c-v3  Xla-Mir-199-P1d-v1  Xla-Mir-199-P1d-v2  Xla-Mir-199-P1d-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1-v2)		 Mir-214-v1 NC_037343.1: 39619567-39619629 [-] UCSC Ensembl
Mir-214-v2 NC_037343.1: 39619567-39619629 [-] UCSC Ensembl
Mir-199-P1-v1 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Mir-199-P1-v2 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Mir-199-P1-v3 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAGAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U  GGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU CA     A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA GU     U
CAGGUACCGCAACGAGAG  A^    U   AUU       C        -   U  UGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-199-P1-v2_5p*
mirBase accessionMIMAT0003544
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
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Proposed targets TargetScanVert: bta-miR-199a-5p
Mature sequence

Bta-Mir-199-P1-v2_3p
mirBase accessionMIMAT0003746
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-3p