Mir-199-P1a-v1

MirGeneDB ID

Dre-Mir-199-P1a-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-199-1

Paralogues

Dre-Mir-199-P1a-v2 Dre-Mir-199-P1a-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P1-v1 Aca-Mir-199-P1-v2 Aca-Mir-199-P1-v3 Ami-Mir-199-P1-v1 Ami-Mir-199-P1-v2 Ami-Mir-199-P1-v3 Bta-Mir-199-P1-v1 Bta-Mir-199-P1-v2 Bta-Mir-199-P1-v3 Cfa-Mir-199-P1-v1 Cfa-Mir-199-P1-v2 Cfa-Mir-199-P1-v3 Cja-Mir-199-P1-v1 Cja-Mir-199-P1-v2 Cja-Mir-199-P1-v3 Cli-Mir-199-P1-v1 Cli-Mir-199-P1-v2 Cli-Mir-199-P1-v3 Cmi-Mir-199-P1-v1 Cmi-Mir-199-P1-v2 Cmi-Mir-199-P1-v3 Cpi-Mir-199-P1-v1 Cpi-Mir-199-P1-v2 Cpi-Mir-199-P1-v3 Cpo-Mir-199-P1-v1 Cpo-Mir-199-P1-v2 Cpo-Mir-199-P1-v3 Dno-Mir-199-P1-v1 Dno-Mir-199-P1-v2 Dno-Mir-199-P1-v3 Eca-Mir-199-P1-v1 Eca-Mir-199-P1-v2 Eca-Mir-199-P1-v3 Ete-Mir-199-P1-v1 Ete-Mir-199-P1-v2 Ete-Mir-199-P1-v3 Gga-Mir-199-P1-v1 Gga-Mir-199-P1-v2 Gga-Mir-199-P1-v3 Gja-Mir-199-P1-v1 Gja-Mir-199-P1-v2 Gja-Mir-199-P1-v3 Gmo-Mir-199-P1a-v1 Gmo-Mir-199-P1a-v2 Gmo-Mir-199-P1a-v3 Hsa-Mir-199-P1-v1 Hsa-Mir-199-P1-v2 Hsa-Mir-199-P1-v3 Laf-Mir-199-P1-v1 Laf-Mir-199-P1-v2 Laf-Mir-199-P1-v3 Lch-Mir-199-P1 Loc-Mir-199-P1-v1 Loc-Mir-199-P1-v2 Mal-Mir-199-P1a-v1 Mal-Mir-199-P1a-v2 Mal-Mir-199-P1a-v3 Mdo-Mir-199-P1-v1 Mdo-Mir-199-P1-v2 Mdo-Mir-199-P1-v3 Mml-Mir-199-P1-v1 Mml-Mir-199-P1-v2 Mml-Mir-199-P1-v3 Mmr-Mir-199-P1-v1 Mmr-Mir-199-P1-v2 Mmr-Mir-199-P1-v3 Mmu-Mir-199-P1-v1 Mmu-Mir-199-P1-v2 Mmu-Mir-199-P1-v3 Mun-Mir-199-P1-v1 Mun-Mir-199-P1-v2 Mun-Mir-199-P1-v3 Neu-Mir-199-P1-v1 Neu-Mir-199-P1-v2 Neu-Mir-199-P1-v3 Oan-Mir-199-P1-v1 Oan-Mir-199-P1-v2 Oan-Mir-199-P1-v3 Ocu-Mir-199-P1-v1 Ocu-Mir-199-P1-v2 Ocu-Mir-199-P1-v3 Pab-Mir-199-P1-v1 Pab-Mir-199-P1-v2 Pab-Mir-199-P1-v3 Pbv-Mir-199-P1-v1 Pbv-Mir-199-P1-v2 Pbv-Mir-199-P1-v3 Pma-Mir-199-o1 Rno-Mir-199-P1-v1 Rno-Mir-199-P1-v2 Rno-Mir-199-P1-v3 Sha-Mir-199-P1-v1 Sha-Mir-199-P1-v2 Sha-Mir-199-P1-v3 Spt-Mir-199-P1 Sto-Mir-199-P1-v1 Sto-Mir-199-P1-v2 Sto-Mir-199-P1-v3 Tgu-Mir-199-P1-v1 Tgu-Mir-199-P1-v2 Tgu-Mir-199-P1-v3 Xtr-Mir-199-P1-v1 Xtr-Mir-199-P1-v2 Xtr-Mir-199-P1-v3

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr20: 14875474-14875534 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P1a-v1)

Mir-199-P1a-v1 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-199-P1a-v2 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-199-P1a-v3 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-214-P1-v1 chr20: 14877660-14877721 [+] UCSC Ensembl
Mir-214-P1-v2 chr20: 14877660-14877721 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGGGCUGGAACUAUCUCCUGCUCCGUCAUCCCAGUGUUCAGACUACCUGUUCAGGAUCAUACUGGUGUACAGUAGUCUGCACAUUGGUUAGACUGUGCAUGGACUCCCGGCGAUGAGGAA

Get precursor sequence

Structure

        10          20        30        40        50        60
GAGGGCUGGAACUAUCU-  -|  UCC   AUC       U        C   U AGGAUC 
                  CC UGC   GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACG   CAG   GGUUACA GUCUGAUG ACA G      U
AAGGAGUAGCGGCCCUCA  U^  UGU   AUU       C        -   U UGGUCA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-199-P1a-v1_5p*

mirBase accession

MIMAT0001277

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-199

Mature sequence

Dre-Mir-199-P1a-v1_3p

mirBase accession

MIMAT0003155

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence