Mir-199-P2a-v2

MirGeneDB ID

Dre-Mir-199-P2a-v2

Family name

MIR-199 (all species)

Seed

ACAGUAG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-199-2

Paralogues

Dre-Mir-199-P1a-v1 Dre-Mir-199-P1a-v2 Dre-Mir-199-P1a-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cja-Mir-199-P2-v1 Cja-Mir-199-P2-v2 Cja-Mir-199-P2-v3 Cli-Mir-199-P2-v1 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Eca-Mir-199-P2-v1 Eca-Mir-199-P2-v2 Eca-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Laf-Mir-199-P2-v1 Laf-Mir-199-P2-v2 Laf-Mir-199-P2-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmr-Mir-199-P2-v1 Mmr-Mir-199-P2-v2 Mmr-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Oan-Mir-199-P2-v1 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pab-Mir-199-P2-v1 Pab-Mir-199-P2-v2 Pab-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr5: 1376779-1376839 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2a-v2)

Mir-199-P2a-v1 chr5: 1376779-1376839 [-] UCSC Ensembl
Mir-199-P2a-v2 chr5: 1376779-1376839 [-] UCSC Ensembl
Mir-199-P2a-v3 chr5: 1376779-1376839 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGUUUUUGUGGACGCCCGUCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAUUAGUGUUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGAUGGGGAUGCUCGAGGUGGACUGC

Get precursor sequence

Structure

        10          20        30        40        50        60
UGGAGUUUUUGUGGACG--|      C     C       U        C   U  GGAAU 
                   CCCGUCC GCCUG CCAGUGU CAGACUAC UGU CA     U
                   GGGUAGG CGGAU GGUUACA GUCUGAUG ACA GU     A
CGUCAGGUGGAGCUCGUAG^      U     U       C        -   U  UUGUG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-199-P2a-v2_5p*

mirBase accession

MIMAT0001277

Sequence

0- CCCAGUGUUCAGACUACCUGUUCA -24

Get sequence

Proposed targets

TargetScanFish: dre-miR-199

Mature sequence

Dre-Mir-199-P2a-v2_3p

mirBase accession

MIMAT0003155

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence