Mir-199-P2-v1

MirGeneDB ID

Cfa-Mir-199-P2-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-199-3

Paralogues

Cfa-Mir-199-P1-v1 Cfa-Mir-199-P1-v2 Cfa-Mir-199-P1-v3 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cja-Mir-199-P2-v1 Cja-Mir-199-P2-v2 Cja-Mir-199-P2-v3 Cli-Mir-199-P2-v1 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Eca-Mir-199-P2-v1 Eca-Mir-199-P2-v2 Eca-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Laf-Mir-199-P2-v1 Laf-Mir-199-P2-v2 Laf-Mir-199-P2-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmr-Mir-199-P2-v1 Mmr-Mir-199-P2-v2 Mmr-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Oan-Mir-199-P2-v1 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pab-Mir-199-P2-v1 Pab-Mir-199-P2-v2 Pab-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr9: 55262353-55262413 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v1)

Mir-199-P2-v1 chr9: 55262353-55262413 [+] UCSC Ensembl
Mir-199-P2-v2 chr9: 55262353-55262413 [+] UCSC Ensembl
Mir-199-P2-v3 chr9: 55262353-55262413 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AAGGACCAGAGGACACC-    CU  -|    C       U       U    U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA G      C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U UUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-199-P2-v1_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUAUCUGUUC -23

Get sequence

Mature sequence

Cfa-Mir-199-P2-v1_3p

mirBase accession

MIMAT0006642

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Proposed targets

TargetScanVert: cfa-miR-199
miRDB: MIMAT0006642