Mir-199-P2-v1

MirGeneDB ID

Oan-Mir-199-P2-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

Paralogues

Oan-Mir-199-P1-v1 Oan-Mir-199-P1-v2 Oan-Mir-199-P1-v3 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cja-Mir-199-P2-v1 Cja-Mir-199-P2-v2 Cja-Mir-199-P2-v3 Cli-Mir-199-P2-v1 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Eca-Mir-199-P2-v1 Eca-Mir-199-P2-v2 Eca-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Laf-Mir-199-P2-v1 Laf-Mir-199-P2-v2 Laf-Mir-199-P2-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmr-Mir-199-P2-v1 Mmr-Mir-199-P2-v2 Mmr-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pab-Mir-199-P2-v1 Pab-Mir-199-P2-v2 Pab-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041731.1: 32349237-32349297 [+]

Precursor
(pre-Mir +30nt flank)

AGGACAGGCCGAGAGGCUCCACUCCGUCUGCCCAGUGUUUAGACUACCUGUUCACUGCUCCAAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGAGACGCACGCCGACCCAC

Get precursor sequence

Structure

        10         20         30        40        50        60
AGGACAGGCCGAGAGGC-    CU  -|    C       U        C   U ACUGCU 
                  UCCA  CC GUCUG CCAGUGU UAGACUAC UGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAUG ACA G      C
CACCCAGCCGCACGCAGA    CG  U^    U       C        -   U UUAGAA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-199-P2-v1_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUACCUGUUC -23

Get sequence

Mature sequence

Oan-Mir-199-P2-v1_3p

mirBase accession

None

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

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