MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-199-P2

Family name MIR-199 (all species)
Seed CAGUAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-199-P1  Lch-Mir-199-P3 
Orthologues Aca-Mir-199-P2-v1  Aca-Mir-199-P2-v2  Aca-Mir-199-P2-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Bta-Mir-199-P2-v1  Bta-Mir-199-P2-v2  Bta-Mir-199-P2-v3  Cfa-Mir-199-P2-v1  Cfa-Mir-199-P2-v2  Cfa-Mir-199-P2-v3  Cja-Mir-199-P2-v1  Cja-Mir-199-P2-v2  Cja-Mir-199-P2-v3  Cli-Mir-199-P2-v1  Cli-Mir-199-P2-v2  Cli-Mir-199-P2-v3  Cmi-Mir-199-P2-v1  Cmi-Mir-199-P2-v2  Cmi-Mir-199-P2-v3  Cpi-Mir-199-P2-v1  Cpi-Mir-199-P2-v2  Cpi-Mir-199-P2-v3  Cpo-Mir-199-P2-v1  Cpo-Mir-199-P2-v2  Cpo-Mir-199-P2-v3  Dno-Mir-199-P2-v1  Dno-Mir-199-P2-v2  Dno-Mir-199-P2-v3  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2a-v2  Dre-Mir-199-P2a-v3  Dre-Mir-199-P2b-v1  Dre-Mir-199-P2b-v2  Dre-Mir-199-P2b-v3  Eca-Mir-199-P2-v1  Eca-Mir-199-P2-v2  Eca-Mir-199-P2-v3  Ete-Mir-199-P2-v1  Ete-Mir-199-P2-v2  Ete-Mir-199-P2-v3  Gga-Mir-199-P2-v1  Gga-Mir-199-P2-v2  Gga-Mir-199-P2-v3  Gja-Mir-199-P2-v1  Gja-Mir-199-P2-v2  Gja-Mir-199-P2-v3  Gmo-Mir-199-P2a-v1  Gmo-Mir-199-P2a-v2  Gmo-Mir-199-P2a-v3  Hsa-Mir-199-P2-v1  Hsa-Mir-199-P2-v2  Hsa-Mir-199-P2-v3  Laf-Mir-199-P2-v1  Laf-Mir-199-P2-v2  Laf-Mir-199-P2-v3  Loc-Mir-199-P2-v1  Loc-Mir-199-P2-v2  Mal-Mir-199-P2a-v1  Mal-Mir-199-P2a-v2  Mal-Mir-199-P2a-v3  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P2-v2  Mdo-Mir-199-P2-v3  Mml-Mir-199-P2-v1  Mml-Mir-199-P2-v2  Mml-Mir-199-P2-v3  Mmr-Mir-199-P2-v1  Mmr-Mir-199-P2-v2  Mmr-Mir-199-P2-v3  Mmu-Mir-199-P2-v1  Mmu-Mir-199-P2-v2  Mmu-Mir-199-P2-v3  Oan-Mir-199-P2-v1  Oan-Mir-199-P2-v2  Oan-Mir-199-P2-v3  Ocu-Mir-199-P2-v1  Ocu-Mir-199-P2-v2  Ocu-Mir-199-P2-v3  Pab-Mir-199-P2-v1  Pab-Mir-199-P2-v2  Pab-Mir-199-P2-v3  Pbv-Mir-199-P2-v1  Pbv-Mir-199-P2-v2  Pbv-Mir-199-P2-v3  Pma-Mir-199-o2-v1  Pma-Mir-199-o2-v2  Pma-Mir-199-o2-v3  Rno-Mir-199-P2-v1  Rno-Mir-199-P2-v2  Rno-Mir-199-P2-v3  Sha-Mir-199-P2-v1  Sha-Mir-199-P2-v2  Sha-Mir-199-P2-v3  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Sto-Mir-199-P2-v2  Sto-Mir-199-P2-v3  Tgu-Mir-199-P2-v1  Tgu-Mir-199-P2-v2  Tgu-Mir-199-P2-v3  Tni-Mir-199-P2a-v1  Tni-Mir-199-P2a-v2  Tni-Mir-199-P2a-v3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH126677.1: 2063652-2063712 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUCAGCAGGAGCCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGGGGAAAAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCCUGGAAACACUUCAAACAAAGA
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Structure
        10        20          30        40        50        60
CCACCUCAGCAGGAGCCU   CUCC--|    C       U        C   U AGGGGG 
                  CCA      GUCUG CCAGUGU CAGACUAC UGU C      A
                  GGU      CGGAU GGUUACA GUCUGAUG ACA G      A
AGAAACAAACUUCACAAA   CCGUGU^    U       C        -   U UUAGAA 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-199-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Lch-Mir-199-P2_3p (predicted)
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
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