MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-199-P2-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-199-1
Paralogues Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gga-Mir-199-P2-v2  Gga-Mir-199-P2-v3 
Orthologues Aca-Mir-199-P2-v1  Aca-Mir-199-P2-v2  Aca-Mir-199-P2-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Bta-Mir-199-P2-v1  Bta-Mir-199-P2-v2  Bta-Mir-199-P2-v3  Cfa-Mir-199-P2-v1  Cfa-Mir-199-P2-v2  Cfa-Mir-199-P2-v3  Cja-Mir-199-P2-v1  Cja-Mir-199-P2-v2  Cja-Mir-199-P2-v3  Cli-Mir-199-P2-v1  Cli-Mir-199-P2-v2  Cli-Mir-199-P2-v3  Cmi-Mir-199-P2-v1  Cmi-Mir-199-P2-v2  Cmi-Mir-199-P2-v3  Cpi-Mir-199-P2-v1  Cpi-Mir-199-P2-v2  Cpi-Mir-199-P2-v3  Cpo-Mir-199-P2-v1  Cpo-Mir-199-P2-v2  Cpo-Mir-199-P2-v3  Dno-Mir-199-P2-v1  Dno-Mir-199-P2-v2  Dno-Mir-199-P2-v3  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2a-v2  Dre-Mir-199-P2a-v3  Dre-Mir-199-P2b-v1  Dre-Mir-199-P2b-v2  Dre-Mir-199-P2b-v3  Eca-Mir-199-P2-v1  Eca-Mir-199-P2-v2  Eca-Mir-199-P2-v3  Ete-Mir-199-P2-v1  Ete-Mir-199-P2-v2  Ete-Mir-199-P2-v3  Gja-Mir-199-P2-v1  Gja-Mir-199-P2-v2  Gja-Mir-199-P2-v3  Gmo-Mir-199-P2a-v1  Gmo-Mir-199-P2a-v2  Gmo-Mir-199-P2a-v3  Hsa-Mir-199-P2-v1  Hsa-Mir-199-P2-v2  Hsa-Mir-199-P2-v3  Laf-Mir-199-P2-v1  Laf-Mir-199-P2-v2  Laf-Mir-199-P2-v3  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Loc-Mir-199-P2-v2  Mal-Mir-199-P2a-v1  Mal-Mir-199-P2a-v2  Mal-Mir-199-P2a-v3  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P2-v2  Mdo-Mir-199-P2-v3  Mml-Mir-199-P2-v1  Mml-Mir-199-P2-v2  Mml-Mir-199-P2-v3  Mmr-Mir-199-P2-v1  Mmr-Mir-199-P2-v2  Mmr-Mir-199-P2-v3  Mmu-Mir-199-P2-v1  Mmu-Mir-199-P2-v2  Mmu-Mir-199-P2-v3  Oan-Mir-199-P2-v1  Oan-Mir-199-P2-v2  Oan-Mir-199-P2-v3  Ocu-Mir-199-P2-v1  Ocu-Mir-199-P2-v2  Ocu-Mir-199-P2-v3  Pab-Mir-199-P2-v1  Pab-Mir-199-P2-v2  Pab-Mir-199-P2-v3  Pbv-Mir-199-P2-v1  Pbv-Mir-199-P2-v2  Pbv-Mir-199-P2-v3  Pma-Mir-199-o2-v1  Pma-Mir-199-o2-v2  Pma-Mir-199-o2-v3  Rno-Mir-199-P2-v1  Rno-Mir-199-P2-v2  Rno-Mir-199-P2-v3  Sha-Mir-199-P2-v1  Sha-Mir-199-P2-v2  Sha-Mir-199-P2-v3  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Sto-Mir-199-P2-v2  Sto-Mir-199-P2-v3  Tgu-Mir-199-P2-v1  Tgu-Mir-199-P2-v2  Tgu-Mir-199-P2-v3  Tni-Mir-199-P2a-v1  Tni-Mir-199-P2a-v2  Tni-Mir-199-P2a-v3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 17: 5405926-5405986 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P2-v1)		 Mir-199-P2-v1 17: 5405926-5405986 [+] UCSC Ensembl
Mir-199-P2-v2 17: 5405926-5405986 [+] UCSC Ensembl
Mir-199-P2-v3 17: 5405926-5405986 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCAGACCACAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA
Get precursor sequence
Structure
        10         20         30        40        50        60
GAGCAGACCACAGAGGC-    CUCC-|    C       U        C   U AGGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU C      A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA G      C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   U UUAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-199-P2-v1_5p*
mirBase accessionMIMAT0001152
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Proposed targets TargetScanVert: gga-miR-199-5p
miRDB: MIMAT0001152
Mature sequence

Gga-Mir-199-P2-v1_3p
mirBase accessionMIMAT0003721
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-199-3p
miRDB: MIMAT0003721