Mir-199-P2-v1

MirGeneDB ID

Cli-Mir-199-P2-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-199-2

Paralogues

Cli-Mir-199-P1-v1 Cli-Mir-199-P1-v2 Cli-Mir-199-P1-v3 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cja-Mir-199-P2-v1 Cja-Mir-199-P2-v2 Cja-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Eca-Mir-199-P2-v1 Eca-Mir-199-P2-v2 Eca-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Laf-Mir-199-P2-v1 Laf-Mir-199-P2-v2 Laf-Mir-199-P2-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmr-Mir-199-P2-v1 Mmr-Mir-199-P2-v2 Mmr-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Oan-Mir-199-P2-v1 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pab-Mir-199-P2-v1 Pab-Mir-199-P2-v2 Pab-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold835: 50412-50472 [+]

Clustered miRNAs
(< 50kb from Mir-199-P2-v1)

Mir-199-P2-v1 scaffold835: 50412-50472 [+]
Mir-199-P2-v2 scaffold835: 50412-50472 [+]
Mir-199-P2-v3 scaffold835: 50412-50472 [+]

Precursor
(pre-Mir +30nt flank)

GAGCAGACUGCAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA

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Structure

        10         20         30        40        50        60
GAGCAGACUGCAGAGGC-    CUCC-|    C       U        C   U AGGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU C      A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA G      C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   U UUAGAG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Star sequence

Cli-Mir-199-P2-v1_5p*

mirBase accession

MIMAT0038573

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Mature sequence

Cli-Mir-199-P2-v1_3p

mirBase accession

MIMAT0038574

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

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