Mir-199-P3-v1

MirGeneDB ID

Dre-Mir-199-P3-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-199-3

Paralogues

Dre-Mir-199-P1a-v1 Dre-Mir-199-P1a-v2 Dre-Mir-199-P1a-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v2 Eca-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v2 Mun-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2 Sha-Mir-199-P3-v3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr3: 47195159-47195219 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P3-v1)

Mir-199-P3-v1 chr3: 47195159-47195219 [-] UCSC Ensembl
Mir-199-P3-v2 chr3: 47195159-47195219 [-] UCSC Ensembl
Mir-199-P3-v3 chr3: 47195159-47195219 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCAGCCACCUCUUGCCUCCCCCUCGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAUGCUGCAGCUGAACAGUAGUCCGCACAUUGGUUAGGCUGGGCUGGGACACACACACCCGCCAAG

Get precursor sequence

Structure

        10        20          30        40        50        60
UCCAGCCACCUCUUGCCU   --|  C     C       UCA      C     AUCAUG 
                  CCC  CCU GCCUG CCAGUGU   GACUAC UGUUC      C
                  GGG  GGG CGGAU GGUUACA   CUGAUG ACAAG      U
GAACCGCCCACACACACA   UC^  U     U       CGC      -     UCGACG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-199-P3-v1_5p*

mirBase accession

MIMAT0001277

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-199

Mature sequence

Dre-Mir-199-P3-v1_3p

mirBase accession

MIMAT0031922

Sequence

39- ACAGUAGUCCGCACAUUGGUUA -61

Get sequence