MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-199-P3-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-199-1
Paralogues Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cja-Mir-199-P3-v1  Cja-Mir-199-P3-v2  Cja-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Eca-Mir-199-P3-v1  Eca-Mir-199-P3-v2  Eca-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Laf-Mir-199-P3-v1  Laf-Mir-199-P3-v2  Laf-Mir-199-P3-v3  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Loc-Mir-199-P3-v2  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmr-Mir-199-P3-v1  Mmr-Mir-199-P3-v2  Mmr-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Neu-Mir-199-P3-v1  Neu-Mir-199-P3-v2  Neu-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pab-Mir-199-P3-v1  Pab-Mir-199-P3-v2  Pab-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709389.1: 179937-179999 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-199-P3-v1)		 Mir-199-P3-v1 NW_017709389.1: 179937-179999 [-] UCSC
Mir-199-P3-v2 NW_017709389.1: 179937-179999 [-] UCSC
Mir-199-P3-v3 NW_017709389.1: 179937-179999 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUGCCCGGGAGCAGAGUCCAGCCCAGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAGCAUAUGAAGUUGUACAGUAGUCUGCACAUUGGUUAGAUCGGGCUUGGCAUAGCGACGCCUUGGCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUGCCCGGGAGCAGAGU-  -|    AGC   C       U        C   U AGGAGCA 
                  CC AGCCC   CUG CCAGUGU CAGACUAC UGU C       U
                  GG UCGGG   GAU GGUUACA GUCUGAUG ACA G       A
ACGGUUCCGCAGCGAUAC  U^    CUA   U       C        -   U UUGAAGU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-199-P3-v1_5p*
mirBase accessionMIMAT0038216
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Mature sequence

Ami-Mir-199-P3-v1_3p
mirBase accessionMIMAT0038217
Sequence 
41- ACAGUAGUCUGCACAUUGGUUA -63
Get sequence