Mir-199-P3-v3

MirGeneDB ID

Hsa-Mir-199-P3-v3

Family name

MIR-199 (all species)

Seed

AGUAGUC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-199a-1

Paralogues

Hsa-Mir-199-P1-v1 Hsa-Mir-199-P1-v2 Hsa-Mir-199-P1-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v2 Eca-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v2 Mun-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2 Sha-Mir-199-P3-v3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr19: 10817429-10817491 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P3-v3)

Mir-199-P3-v1 chr19: 10817429-10817491 [-] UCSC Ensembl
Mir-199-P3-v2 chr19: 10817429-10817491 [-] UCSC Ensembl
Mir-199-P3-v3 chr19: 10817429-10817491 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUGCAGGAUGGAUAGCCGGCCCCGCCAACCCAGUGUUCAGACUACCUGUUCAGGAGGCUCUCAAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGGUGAGCGGCUCGUCGAGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
UUCUGCAGGAUGGAUAG-  -|    C   AAC       U        C   UCAGGAGGC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU         U
                  GG UCGGG CGG   GGUUACA GUCUGAUG ACA         C
AGAGCUGCUCGGCGAGUG  U^    U   AUU       C        -   UGUGUAACU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-199-P3-v3_5p*

mirBase accession

MIMAT0000231

Sequence

0- CCCAGUGUUCAGACUACCUGUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000231
TargetScanVert: hsa-miR-199a-5p
TargetMiner: hsa-miR-199a-5p
miRDB: MIMAT0000231

Mature sequence

Hsa-Mir-199-P3-v3_3p

mirBase accession

MIMAT0000232

Sequence

42- CAGUAGUCUGCACAUUGGUUA -63

Get sequence

Proposed targets

microrna.org: MIMAT0000232
TargetScanVert: hsa-miR-199a-3p
TargetMiner: hsa-miR-199a-3p
miRDB: MIMAT0000232