Mir-199-P3-v3

MirGeneDB ID

Sha-Mir-199-P3-v3

Family name

MIR-199 (all species)

Seed

AGUAGUC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-199a

Paralogues

Sha-Mir-199-P1-v1 Sha-Mir-199-P1-v2 Sha-Mir-199-P1-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v2 Eca-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v2 Mun-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL841403.1: 248965-249027 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P3-v3)

Mir-199-P3-v1 GL841403.1: 248965-249027 [+] UCSC Ensembl
Mir-199-P3-v2 GL841403.1: 248965-249027 [+] UCSC Ensembl
Mir-199-P3-v3 GL841403.1: 248965-249027 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAUCUUCUCAAAUUCCAGCCCCACCAGCCCAGUGUUCAGACUACCUGUCCAGGAAAUUGCAAAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGAAAAGCAUCGACUCAGGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
AAGAAUCUUCUCAAAUU-  -|    CA  AGC       U        C   CCAGGAAAU 
                  CC AGCCC  CC   CCAGUGU CAGACUAC UGU         U
                  GG UCGGG  GG   GGUUACA GUCUGAUG ACA         G
AGGACUCAGCUACGAAAA  U^    UC  AUU       C        -   UGUGUAAAC 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-199-P3-v3_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUCAGACUACCUGUC -22

Get sequence

Mature sequence

Sha-Mir-199-P3-v3_3p

mirBase accession

MIMAT0022785

Sequence

42- CAGUAGUCUGCACAUUGGUUA -63

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