MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-199-P3-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-199-2
Paralogues Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Gmo-Mir-199-P1b-v1  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Gmo-Mir-199-P2a-v1  Gmo-Mir-199-P2a-v2  Gmo-Mir-199-P2a-v3  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Ami-Mir-199-P3-v1  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cja-Mir-199-P3-v1  Cja-Mir-199-P3-v2  Cja-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Eca-Mir-199-P3-v1  Eca-Mir-199-P3-v2  Eca-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Laf-Mir-199-P3-v1  Laf-Mir-199-P3-v2  Laf-Mir-199-P3-v3  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Loc-Mir-199-P3-v2  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmr-Mir-199-P3-v1  Mmr-Mir-199-P3-v2  Mmr-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Neu-Mir-199-P3-v1  Neu-Mir-199-P3-v2  Neu-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pab-Mir-199-P3-v1  Pab-Mir-199-P3-v2  Pab-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2428: 217011-217071 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v1)
Mir-199-P3-v1 GeneScaffold_2428: 217011-217071 [+] UCSC Ensembl
Mir-199-P3-v2 GeneScaffold_2428: 217011-217071 [+] UCSC Ensembl
Mir-199-P3-v3 GeneScaffold_2428: 217011-217071 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCCUCCCACACUCACCCCCCCAGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGGCUGCGUCUGAACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGACAGACACGCUCCGUCGG
Get precursor sequence
Structure
        10         20         30        40        50        60
CCCGCCUCCCACACUCA-   C-|        C       U        C     AUCAGG 
                  CCC  CCCAGCCUG CCAGUGU CAGACUAC UGUUC      C
                  GGG  GGGUCGGAU GGUUACA GUCUGAUG ACAAG      U
GGCUGCCUCGCACAGACA   UC^        U       C        -     UCUGCG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-199-P3-v1_5p*

mirBase accessionMIMAT0044025
Sequence
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Gmo-Mir-199-P3-v1_3p

mirBase accessionMIMAT0044190
Sequence
39- ACAGUAGUCUGCACAUUGGUUA -61
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