Mir-199-P3

MirGeneDB ID

Xtr-Mir-199-P3

Family name

MIR-199 (all species)

Seed

CCAGUGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-199b

Paralogues

Xtr-Mir-199-P1-v1 Xtr-Mir-199-P1-v2 Xtr-Mir-199-P1-v3

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v2 Eca-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v2 Mun-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2 Sha-Mir-199-P3-v3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr3: 127964118-127964178 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAUCCCGAGAGGUGGGUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGGACAGAACCUGAACAGUAGUCUACACACUGGUUAAACUGGGCCAUGCGGUCAACUGCUGCACAU

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Structure

        10          20        30        40        50        60
AAGAUCCCGAGAGGUGG--|      C   CCC       UC       G     GUUGGA 
                   GUGGUCC GUU   CCAGUGU  AGACUAC UGUUC      C
                   UACCGGG CAA   GGUCACA  UCUGAUG ACAAG      A
UACACGUCGUCAACUGGCG^      U   AUU       CA       -     UCCAAG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-199-P3_5p

mirBase accession

MIMAT0003692

Sequence

0- CCCAGUGUUCAGACUACGUGUUC -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-199b

Star sequence

Xtr-Mir-199-P3_3p*

mirBase accession

None

Sequence

39- ACAGUAGUCUACACACUGGUUA -61

Get sequence