MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-199-P3

Family name MIR-199 (all species)
Seed CCAGUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-199b
Paralogues Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Ami-Mir-199-P3-v1  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Loc-Mir-199-P3-v2  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr3: 127964118-127964178 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUCCCGAGAGGUGGGUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGGACAGAACCUGAACAGUAGUCUACACACUGGUUAAACUGGGCCAUGCGGUCAACUGCUGCACAU
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Structure
        10          20        30        40        50        60
AAGAUCCCGAGAGGUGG--|      C   CCC       UC       G     GUUGGA 
                   GUGGUCC GUU   CCAGUGU  AGACUAC UGUUC      C
                   UACCGGG CAA   GGUCACA  UCUGAUG ACAAG      A
UACACGUCGUCAACUGGCG^      U   AUU       CA       -     UCCAAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-199-P3_5p

mirBase accessionMIMAT0003692
Sequence
0- CCCAGUGUUCAGACUACGUGUUC -23
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Proposed targets TargetScanVert: xtr-miR-199b
Star sequence

Xtr-Mir-199-P3_3p*

mirBase accessionNone
Sequence
39- ACAGUAGUCUACACACUGGUUA -61
Get sequence