Mir-199-P3-v2

MirGeneDB ID

Eca-Mir-199-P3-v2

Family name

MIR-199 (all species)

Seed

ACAGUAG

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-199-P1-v1 Eca-Mir-199-P1-v2 Eca-Mir-199-P1-v3 Eca-Mir-199-P2-v1 Eca-Mir-199-P2-v2 Eca-Mir-199-P2-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v2 Mun-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2 Sha-Mir-199-P3-v3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009154.1: 51126963-51127025 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCCACGGAUGGACAGCCGGCCCCGCCCGCCCAGUGUUCAGACUACCUGUUCAGGGGGCUCCGAAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCCUGGGCAGCGGCGCGGCGACGG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGCCACGGAUGGACAG-  -|    C   CGC       U        C   U  GGGGGC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU CA      U
                  GG CCGGG CGG   GGUUACA GUCUGAUG ACA GU      C
GGCAGCGGCGCGGCGACG  U^    U   AUU       C        -   U  GUAAGC 
 120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-199-P3-v2_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUCAGACUACCUGUUCA -24

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Mature sequence

Eca-Mir-199-P3-v2_3p

mirBase accession

None

Sequence

40- UACAGUAGUCUGCACAUUGGUUA -63

Get sequence