Mir-199-P3-v2

MirGeneDB ID

Mun-Mir-199-P3-v2

Family name

MIR-199 (all species)

Seed

ACAGUAG

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-199-P1-v1 Mun-Mir-199-P1-v2 Mun-Mir-199-P1-v3 Mun-Mir-199-P3-v1 Mun-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P3-v1 Aca-Mir-199-P3-v2 Aca-Mir-199-P3-v3 Ami-Mir-199-P3-v1 Ami-Mir-199-P3-v2 Ami-Mir-199-P3-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3 Cfa-Mir-199-P3-v1 Cfa-Mir-199-P3-v2 Cfa-Mir-199-P3-v3 Cja-Mir-199-P3-v1 Cja-Mir-199-P3-v2 Cja-Mir-199-P3-v3 Cpi-Mir-199-P3-v1 Cpi-Mir-199-P3-v2 Cpi-Mir-199-P3-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3 Dre-Mir-199-P3-v1 Dre-Mir-199-P3-v2 Dre-Mir-199-P3-v3 Eca-Mir-199-P3-v1 Eca-Mir-199-P3-v2 Eca-Mir-199-P3-v3 Ete-Mir-199-P3-v1 Ete-Mir-199-P3-v2 Ete-Mir-199-P3-v3 Gja-Mir-199-P3-v1 Gja-Mir-199-P3-v2 Gja-Mir-199-P3-v3 Gmo-Mir-199-P3-v1 Gmo-Mir-199-P3-v2 Gmo-Mir-199-P3-v3 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3 Laf-Mir-199-P3-v1 Laf-Mir-199-P3-v2 Laf-Mir-199-P3-v3 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Loc-Mir-199-P3-v2 Mal-Mir-199-P3-v1 Mal-Mir-199-P3-v2 Mal-Mir-199-P3-v3 Mdo-Mir-199-P3-v1 Mdo-Mir-199-P3-v2 Mdo-Mir-199-P3-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3 Mmr-Mir-199-P3-v1 Mmr-Mir-199-P3-v2 Mmr-Mir-199-P3-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3 Neu-Mir-199-P3-v1 Neu-Mir-199-P3-v2 Neu-Mir-199-P3-v3 Ocu-Mir-199-P3-v1 Ocu-Mir-199-P3-v2 Ocu-Mir-199-P3-v3 Pab-Mir-199-P3-v1 Pab-Mir-199-P3-v2 Pab-Mir-199-P3-v3 Pbv-Mir-199-P3-v1 Pbv-Mir-199-P3-v2 Pbv-Mir-199-P3-v3 Pma-Mir-199-o3 Sha-Mir-199-P3-v1 Sha-Mir-199-P3-v2 Sha-Mir-199-P3-v3 Tni-Mir-199-P3-v1 Tni-Mir-199-P3-v2 Tni-Mir-199-P3-v3 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

199-P3-v1_LR594634.1:197764192-197764453: 101-162 [+]

Precursor
(pre-Mir +30nt flank)

CCAGCAGGCGACGCCCACCGGCCCCAUCUGCCCAGUGUUCAGACUACCUGUUCAGGUAGCUAGAAGUUGCACAGUAGUCUACACACUGGUUAGGUUGGGCUUGGUACAGCAGCCUCUCCACU

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCAGCAGGCGACGCCCA-  -|    C     C       UC       C   U  GGUAGC 
                  CC GGCCC AUCUG CCAGUGU  AGACUAC UGU CA      \
                  GG UCGGG UGGAU GGUCACA  UCUGAUG ACA GU      U
UCACCUCUCCGACGACAU  U^    U     U       CA       -   C  UGAAGA 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Mun-Mir-199-P3-v2_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUCAGACUACCUGUUCA -24

Get sequence

Mature sequence

Mun-Mir-199-P3-v2_3p (predicted)

mirBase accession

None

Sequence

39- CACAGUAGUCUACACACUGGUUA -62

Get sequence