Mir-199-P1-v1

MirGeneDB ID

Cpo-Mir-199-P1-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-199-2

Paralogues

Cpo-Mir-199-P1-v2 Cpo-Mir-199-P1-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Cpo-Mir-199-P3-v1 Cpo-Mir-199-P3-v2 Cpo-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P1-v1 Aca-Mir-199-P1-v2 Aca-Mir-199-P1-v3 Ami-Mir-199-P1-v1 Ami-Mir-199-P1-v2 Ami-Mir-199-P1-v3 Bta-Mir-199-P1-v1 Bta-Mir-199-P1-v2 Bta-Mir-199-P1-v3 Cfa-Mir-199-P1-v1 Cfa-Mir-199-P1-v2 Cfa-Mir-199-P1-v3 Cja-Mir-199-P1-v1 Cja-Mir-199-P1-v2 Cja-Mir-199-P1-v3 Cli-Mir-199-P1-v1 Cli-Mir-199-P1-v2 Cli-Mir-199-P1-v3 Cmi-Mir-199-P1-v1 Cmi-Mir-199-P1-v2 Cmi-Mir-199-P1-v3 Cpi-Mir-199-P1-v1 Cpi-Mir-199-P1-v2 Cpi-Mir-199-P1-v3 Dno-Mir-199-P1-v1 Dno-Mir-199-P1-v2 Dno-Mir-199-P1-v3 Dre-Mir-199-P1a-v1 Dre-Mir-199-P1a-v2 Dre-Mir-199-P1a-v3 Eca-Mir-199-P1-v1 Eca-Mir-199-P1-v2 Eca-Mir-199-P1-v3 Ete-Mir-199-P1-v1 Ete-Mir-199-P1-v2 Ete-Mir-199-P1-v3 Gga-Mir-199-P1-v1 Gga-Mir-199-P1-v2 Gga-Mir-199-P1-v3 Gja-Mir-199-P1-v1 Gja-Mir-199-P1-v2 Gja-Mir-199-P1-v3 Gmo-Mir-199-P1a-v1 Gmo-Mir-199-P1a-v2 Gmo-Mir-199-P1a-v3 Gmo-Mir-199-P1b-v1 Gmo-Mir-199-P1b-v2 Gmo-Mir-199-P1b-v3 Hsa-Mir-199-P1-v1 Hsa-Mir-199-P1-v2 Hsa-Mir-199-P1-v3 Laf-Mir-199-P1-v1 Laf-Mir-199-P1-v2 Laf-Mir-199-P1-v3 Lch-Mir-199-P1 Loc-Mir-199-P1-v1 Loc-Mir-199-P1-v2 Mal-Mir-199-P1a-v1 Mal-Mir-199-P1a-v2 Mal-Mir-199-P1a-v3 Mal-Mir-199-P1b-as Mal-Mir-199-P1b-v1 Mal-Mir-199-P1b-v2 Mal-Mir-199-P1b-v3 Mdo-Mir-199-P1-v1 Mdo-Mir-199-P1-v2 Mdo-Mir-199-P1-v3 Mml-Mir-199-P1-v1 Mml-Mir-199-P1-v2 Mml-Mir-199-P1-v3 Mmr-Mir-199-P1-v1 Mmr-Mir-199-P1-v2 Mmr-Mir-199-P1-v3 Mmu-Mir-199-P1-v1 Mmu-Mir-199-P1-v2 Mmu-Mir-199-P1-v3 Mun-Mir-199-P1-v1 Mun-Mir-199-P1-v2 Mun-Mir-199-P1-v3 Neu-Mir-199-P1-v1 Neu-Mir-199-P1-v2 Neu-Mir-199-P1-v3 Oan-Mir-199-P1-v1 Oan-Mir-199-P1-v2 Oan-Mir-199-P1-v3 Ocu-Mir-199-P1-v1 Ocu-Mir-199-P1-v2 Ocu-Mir-199-P1-v3 Pab-Mir-199-P1-v1 Pab-Mir-199-P1-v2 Pab-Mir-199-P1-v3 Pbv-Mir-199-P1-v1 Pbv-Mir-199-P1-v2 Pbv-Mir-199-P1-v3 Pma-Mir-199-o1 Rno-Mir-199-P1-v1 Rno-Mir-199-P1-v2 Rno-Mir-199-P1-v3 Sha-Mir-199-P1-v1 Sha-Mir-199-P1-v2 Sha-Mir-199-P1-v3 Spt-Mir-199-P1 Sto-Mir-199-P1-v1 Sto-Mir-199-P1-v2 Sto-Mir-199-P1-v3 Tgu-Mir-199-P1-v1 Tgu-Mir-199-P1-v2 Tgu-Mir-199-P1-v3 Tni-Mir-199-P1b-v1 Tni-Mir-199-P1b-v2 Tni-Mir-199-P1b-v3 Xla-Mir-199-P1c-v1 Xla-Mir-199-P1c-v2 Xla-Mir-199-P1c-v3 Xla-Mir-199-P1d-v1 Xla-Mir-199-P1d-v2 Xla-Mir-199-P1d-v3 Xtr-Mir-199-P1-v1 Xtr-Mir-199-P1-v2 Xtr-Mir-199-P1-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_12: 11462616-11462676 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-199-P1-v1)

Mir-199-P1-v1 scaffold_12: 11462616-11462676 [+] UCSC
Mir-199-P1-v2 scaffold_12: 11462616-11462676 [+] UCSC
Mir-199-P1-v3 scaffold_12: 11462616-11462676 [+] UCSC
Mir-214-v1 scaffold_12: 11468170-11468232 [+] UCSC
Mir-214-v2 scaffold_12: 11468170-11468232 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGACAGCAACGCCAUGAAC

Get precursor sequence

Structure

        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U AGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA G      U
CAAGUACCGCAACGACAG  A^    U   AUU       C        -   U UUGCCG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-199-P1-v1_5p*

mirBase accession

MIMAT0047086

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Mature sequence

Cpo-Mir-199-P1-v1_3p

mirBase accession

MIMAT0047087

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence