MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-199-P1b-v3

Family name MIR-199 (all species)
Seed AGUAGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-199-1
Paralogues Tni-Mir-199-P1b-v1  Tni-Mir-199-P1b-v2  Tni-Mir-199-P2a-v1  Tni-Mir-199-P2a-v2  Tni-Mir-199-P2a-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cja-Mir-199-P1-v1  Cja-Mir-199-P1-v2  Cja-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Eca-Mir-199-P1-v1  Eca-Mir-199-P1-v2  Eca-Mir-199-P1-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Gmo-Mir-199-P1b-v1  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Laf-Mir-199-P1-v1  Laf-Mir-199-P1-v2  Laf-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P1b-v2  Mal-Mir-199-P1b-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmr-Mir-199-P1-v1  Mmr-Mir-199-P1-v2  Mmr-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Neu-Mir-199-P1-v1  Neu-Mir-199-P1-v2  Neu-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pab-Mir-199-P1-v1  Pab-Mir-199-P1-v2  Pab-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 2934183-2934243 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1b-v3)		 Mir-199-P1b-v1 15: 2934183-2934243 [+] UCSC Ensembl
Mir-199-P1b-v2 15: 2934183-2934243 [+] UCSC Ensembl
Mir-199-P1b-v3 15: 2934183-2934243 [+] UCSC Ensembl
Mir-214-P2-v1 15: 2935595-2935657 [+] UCSC Ensembl
Mir-214-P2-v2 15: 2935596-2935656 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCCUGGCUCCUCCACCCGGCUCCGUCCACCCAGUGUUCAGACUACCUGUUCAUUGUCAUACUGGUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCACGGACCCUCGUCUGUCAGUCU
Get precursor sequence
Structure
        10         20         30        40        50        60
AGGCCUGGCUCCUCCAC-   -|   C   CAC       U        C   UCAUUGUC 
                  CCG GCUC GUC   CCAGUGU CAGACUAC UGU        A
                  GGC CGGG CAG   GGUUACA GUCUGAUG ACA        U
UCUGACUGUCUGCUCCCA   A^   U   AUU       C        -   UGUGGUCA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-199-P1b-v3_5p*
mirBase accessionMIMAT0002960
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Mature sequence

Tni-Mir-199-P1b-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence