MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-214-P2-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-214
Paralogues Tni-Mir-214-P1-v1  Tni-Mir-214-P1-v2  Tni-Mir-214-P2-v2 
Orthologues Cja-Mir-214  Gmo-Mir-214-P2-v1  Gmo-Mir-214-P2-v2  Laf-Mir-214  Lch-Mir-214  Mal-Mir-214-P2-v1  Mal-Mir-214-P2-v2  Mun-Mir-214  Pab-Mir-214  Spt-Mir-214 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 2935595-2935657 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P2-v1)		 Mir-199-P1b-v1 15: 2934183-2934243 [+] UCSC Ensembl
Mir-199-P1b-v2 15: 2934183-2934243 [+] UCSC Ensembl
Mir-199-P1b-v3 15: 2934183-2934243 [+] UCSC Ensembl
Mir-214-P2-v1 15: 2935595-2935657 [+] UCSC Ensembl
Mir-214-P2-v2 15: 2935596-2935656 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCACCUGGCUGGAGGAGUUGCAGUGUGUCUGCCUAUCUCCACUUGCUGUGCAGAAUAUCCUCCAACCUGUACAGCAGGCACAGACAGGCAGAUAGACAUCAGCCCAUCGAGAGCGCCAGCAG
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Structure
        10          20        30        40        50        60 
AGCACCUGGCUGGAGGA--|   CA  G         A   CCA          AGAAUAUC 
                   GUUG  GU UGUCUGCCU UCU   CUUGCUGUGC        \
                   CGAC  CA AUAGACGGA AGA   GGACGACAUG        C
GACGACCGCGAGAGCUACC^   UA  G         C   CAC          UCCAACCU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-214-P2-v1_5p*
mirBase accessionNone
Sequence 
0- UGCCUAUCUCCACUUGCUGUGC -22
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Mature sequence

Tni-Mir-214-P2-v1_3p
mirBase accessionMIMAT0003027
Sequence 
41- ACAGCAGGCACAGACAGGCAGA -63
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