MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-214-P1-v2

Family name MIR-214 (all species)
Seed CCUGUCU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-214
Paralogues Tni-Mir-214-P1-v1  Tni-Mir-214-P2-v1  Tni-Mir-214-P2-v2 
Orthologues Dre-Mir-214-P1-v1  Dre-Mir-214-P1-v2  Gmo-Mir-214-P1  Lch-Mir-214  Mal-Mir-214-P1-v1  Mal-Mir-214-P1-v2  Mun-Mir-214  Spt-Mir-214 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
1: 12449357-12449415 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P1-v2)
Mir-214-P1-v1 1: 12449356-12449416 [+] UCSC Ensembl
Mir-214-P1-v2 1: 12449357-12449415 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGACAGGAUGAGACUGUUGUGGUGUGUCUGCCUGUCUACACUUGCUGUGCAGACCUUCUGCUCCUGUACAGCAGGCACAGACAGGCAGACAGAUGGCAGCCCCACUGACAUCAGAAGA
Get precursor sequence
Structure
        10          20        30        40        50         
GUGACAGGAUGAGACUG--|   G  G             ACA           GACCUU 
                   UUGU GU UGUCUGCCUGUCU   CUUGCUGUGCA      \
                   GACG UA ACAGACGGACAGA   GGACGACAUGU      C
AGAAGACUACAGUCACCCC^   G  G             CAC           CCUCGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-214-P1-v2_5p

mirBase accessionNone
Sequence
0- GCCUGUCUACACUUGCUGUGCA -22
Get sequence
Star sequence

Tni-Mir-214-P1-v2_3p*

mirBase accessionMIMAT0003027
Sequence
37- UACAGCAGGCACAGACAGGCAG -59
Get sequence