MirGeneDB ID | Mal-Mir-214-P1-v1 |
Family name |
MIR-214 (all species) |
Seed |
GCCUGUC |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-214-P1-v2
Mal-Mir-214-P2-v1
Mal-Mir-214-P2-v2
|
Orthologues |
Cja-Mir-214
Dre-Mir-214-P1-v1
Dre-Mir-214-P1-v2
Gmo-Mir-214-P1
Laf-Mir-214
Lch-Mir-214
Mun-Mir-214
Pab-Mir-214
Spt-Mir-214
Tni-Mir-214-P1-v1
Tni-Mir-214-P1-v2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Gnathostomata
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884749.1: 81837-81897 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGAUAGGAUAAGACUGUUGUGGUGUGUCUGCCUGUCUACACUUGCUGUGCAGACCUUCUGCUCCUGUACAGCAGGCACAGACAGGCAGACAGAUGGCAGCCCCACUGACAUCAAAACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGAUAGGAUAAGACU--| G G ACA AGACCUU
GUUGU GU UGUCUGCCUGUCU CUUGCUGUGC \
CGACG UA ACAGACGGACAGA GGACGACAUG C
GACAAAACUACAGUCACCC^ G G CAC UCCUCGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Mal-Mir-214-P1-v1_5p |
mirBase accession | None |
Sequence |
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
|
Co-mature sequence |
Mal-Mir-214-P1-v1_3p |
mirBase accession | None |
Sequence |
39- ACAGCAGGCACAGACAGGCAGA -61
Get sequence
|