MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-214-P1

Family name MIR-214 (all species)
Seed GCCUGUC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-214-1
Paralogues Gmo-Mir-214-P2-v1  Gmo-Mir-214-P2-v2 
Orthologues Cja-Mir-214  Dre-Mir-214-P1-v1  Dre-Mir-214-P1-v2  Laf-Mir-214  Lch-Mir-214  Mal-Mir-214-P1-v1  Mal-Mir-214-P1-v2  Mun-Mir-214  Pab-Mir-214  Spt-Mir-214  Tni-Mir-214-P1-v1  Tni-Mir-214-P1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Gnathostomata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3026: 83514-83574 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P1)
Mir-199-P1a-v1 GeneScaffold_3026: 81081-81141 [+] UCSC Ensembl
Mir-199-P1a-v2 GeneScaffold_3026: 81081-81141 [+] UCSC Ensembl
Mir-199-P1a-v3 GeneScaffold_3026: 81081-81141 [+] UCSC Ensembl
Mir-214-P1 GeneScaffold_3026: 83514-83574 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGAAGACUAUCAGUGUUGUGGUGUGUCUGCCUGUCUACACUUGCUGUGCAGACAUUCUGCUCCUGUACAGCAGGCACAGACAGGCAGACAGAUGGCAGCCCCGCAGGCAGACGGGUCU
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Structure
        10          20        30        40        50          
UUUUGAAGACUAUCAGU--|    G  G             ACA          AGACAUU 
                   GUUGU GU UGUCUGCCUGUCU   CUUGCUGUGC       \
                   CGACG UA ACAGACGGACAGA   GGACGACAUG       C
UCUGGGCAGACGGACGCCC^    G  G             CAC          UCCUCGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-214-P1_5p

mirBase accessionMIMAT0044208
Sequence
0- UGCCUGUCUACACUUGCUGUGC -22
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Star sequence

Gmo-Mir-214-P1_3p*

mirBase accessionMIMAT0044209
Sequence
39- ACAGCAGGCACAGACAGGCAGA -61
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