MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-214-P1-v1

Family name MIR-214 (all species)
Seed GCCUGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-214
Paralogues Tni-Mir-214-P1-v2  Tni-Mir-214-P2-v1  Tni-Mir-214-P2-v2 
Orthologues Cja-Mir-214  Dre-Mir-214-P1-v1  Dre-Mir-214-P1-v2  Gmo-Mir-214-P1  Laf-Mir-214  Lch-Mir-214  Mal-Mir-214-P1-v1  Mal-Mir-214-P1-v2  Mun-Mir-214  Pab-Mir-214  Spt-Mir-214 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 1: 12449356-12449416 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P1-v1)		 Mir-214-P1-v1 1: 12449356-12449416 [+] UCSC Ensembl
Mir-214-P1-v2 1: 12449357-12449415 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGACAGGAUGAGACUGUUGUGGUGUGUCUGCCUGUCUACACUUGCUGUGCAGACCUUCUGCUCCUGUACAGCAGGCACAGACAGGCAGACAGAUGGCAGCCCCACUGACAUCAGAAGAC
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Structure
        10          20        30        40        50          
GGUGACAGGAUGAGACU--|    G  G             ACA          AGACCUU 
                   GUUGU GU UGUCUGCCUGUCU   CUUGCUGUGC       \
                   CGACG UA ACAGACGGACAGA   GGACGACAUG       C
CAGAAGACUACAGUCACCC^    G  G             CAC          UCCUCGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-214-P1-v1_5p
mirBase accessionNone
Sequence 
0- UGCCUGUCUACACUUGCUGUGC -22
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Star sequence

Tni-Mir-214-P1-v1_3p*
mirBase accessionMIMAT0003027
Sequence 
39- ACAGCAGGCACAGACAGGCAGA -61
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