MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-214-P2-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-214-2
Paralogues Gmo-Mir-214-P1  Gmo-Mir-214-P2-v2 
Orthologues Lch-Mir-214  Mal-Mir-214-P2-v1  Mal-Mir-214-P2-v2  Mun-Mir-214  Spt-Mir-214  Tni-Mir-214-P2-v1  Tni-Mir-214-P2-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Gnathostomata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4457: 214260-214322 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-P2-v1)
Mir-214-P2-v1 GeneScaffold_4457: 214260-214322 [-] UCSC Ensembl
Mir-214-P2-v2 GeneScaffold_4457: 214261-214321 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGAUUGGCUGAACCAGCCGCAGUGUGUCUGCCUGUCUUCACUUGCUGUGCAGUAAUUGGUUCAGCCUGUACAGCAGGCACAGACAGGCAGACAGACGUCAGCCACUCAAGGACCGACUGAC
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Structure
        10          20        30        40        50        60 
GUUGAUUGGCUGAACCA--| CGCA  G             UCA          AGUAAUUG 
                   GC    GU UGUCUGCCUGUCU   CUUGCUGUGC        \
                   CG    CA ACAGACGGACAGA   GGACGACAUG        G
CAGUCAGCCAGGAACUCAC^ ACUG  G             CAC          UCCGACUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-214-P2-v1_5p*

mirBase accessionMIMAT0046035
Sequence
0- UGCCUGUCUUCACUUGCUGUGC -22
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Mature sequence

Gmo-Mir-214-P2-v1_3p

mirBase accessionMIMAT0044209
Sequence
41- ACAGCAGGCACAGACAGGCAGA -63
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