MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-331

Family name MIR-331 (all species)
Seed CCCCUGG
Species Cow (Bos taurus)
MiRBase ID bta-mir-331
Paralogues
Orthologues Cfa-Mir-331  Cja-Mir-331  Cpo-Mir-331  Dno-Mir-331  Eca-Mir-331  Ete-Mir-331  Hsa-Mir-331  Laf-Mir-331  Mml-Mir-331  Mmr-Mir-331  Mmu-Mir-331  Ocu-Mir-331  Pab-Mir-331  Rno-Mir-331 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037332.1: 24946436-24946491 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAGGAGUUUGGUUUUGUUUGGGUUUGUUCUAGGUAUGGUCCCAGGGAUCCCAGAUCAAACCAGGCCCCUGGGCCUAUCCUAGAACCAACCUAAACUCGCGCAUCAUUCCUGGAA
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Structure
        10          20        30        40        50        
CCAAGGAGUUUGGUUUU--|        U        U    U       AU CCAGAU 
                   GUUUGGGUU GUUCUAGG AUGG CCCAGGG  C      \
                   CAAAUCCAA CAAGAUCC UAUC GGGUCCC  G      C
AAGGUCCUUACUACGCGCU^        C        -    C       CG ACCAAA 
    110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-331_5p*

mirBase accessionMIMAT0026716
Sequence
0- CUAGGUAUGGUCCCAGGGAUCC -22
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Proposed targets TargetScanVert: bta-miR-331-5p
Mature sequence

Bta-Mir-331_3p

mirBase accessionMIMAT0004339
Sequence
35- GCCCCUGGGCCUAUCCUAGAA -56
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Proposed targets TargetScanVert: bta-miR-331-3p