MirGeneDB ID | Laf-Mir-331 |
Family name |
MIR-331 (all species) |
Seed |
UAGGUAU |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-331
Cfa-Mir-331
Cja-Mir-331
Cpo-Mir-331
Dno-Mir-331
Eca-Mir-331
Ete-Mir-331
Hsa-Mir-331
Mml-Mir-331
Mmr-Mir-331
Mmu-Mir-331
Ocu-Mir-331
Pab-Mir-331
Rno-Mir-331
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010029.1: 89810782-89810837 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGUGGAAUUUGGUUUUGUUUGGGUUUGUUCUAGGUAUGGUCCCAGGGAUCCCAGAUCAAACCAGGCCCCUGGGCCUAUCCUAGAACCAACCUAAACUCUUGCAUCAUUCCUGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGUGGAAUUUGGUUUU--| U U U AU CCAGAU
GUUUGGGUU GUUCUAGG AUGG CCCAGGG C \
CAAAUCCAA CAAGAUCC UAUC GGGUCCC G C
GAGGUCCUUACUACGUUCU^ C - C CG ACCAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-331_5p |
mirBase accession | None |
Sequence |
0- CUAGGUAUGGUCCCAGGGAUCC -22
Get sequence
|
Co-mature sequence |
Laf-Mir-331_3p |
mirBase accession | None |
Sequence |
35- GCCCCUGGGCCUAUCCUAGAA -56
Get sequence
|