| MirGeneDB ID | Eca-Mir-331 |
|---|
| Family name |
MIR-331 (all species) |
|---|
| Seed |
CCCCUGG |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-331
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-331
Cfa-Mir-331
Cja-Mir-331
Cpo-Mir-331
Dno-Mir-331
Ete-Mir-331
Hsa-Mir-331
Laf-Mir-331
Mml-Mir-331
Mmr-Mir-331
Mmu-Mir-331
Ocu-Mir-331
Pab-Mir-331
Rno-Mir-331
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009175.1: 21450597-21450652 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAAGGAAUUUGGUUUUGUUUGGGUUUGUUCUAGGUAUGGUCCCAGGGAUCCCAGAUCAAACCAGGCCCCUGGGCCUAUCCUAGAACCAACCUAAACUCGCGCAUCAUUCCUGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCAAGGAAUUUGGUUUU--| U U U AU CCAGAU
GUUUGGGUU GUUCUAGG AUGG CCCAGGG C \
CAAAUCCAA CAAGAUCC UAUC GGGUCCC G C
AAGGUCCUUACUACGCGCU^ C - C CG ACCAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Eca-Mir-331_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUAGGUAUGGUCCCAGGGAUCC -22
Get sequence
|
|---|
| Mature sequence |
Eca-Mir-331_3p |
| mirBase accession | MIMAT0013188 |
|---|
| Sequence |
35- GCCCCUGGGCCUAUCCUAGAA -56
Get sequence
|
|---|
