MirGeneDB 3.0

MirGeneDB ID

Cel-Let-7-P5

Family name LET-7 (all species)
Seed GAGGUAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-let-7
Paralogues Cel-Let-7-P6  Cel-Let-7-P7  Cel-Let-7-P8  Cel-Let-7-P9 
Orthologues Aae-Let-7  Aga-Let-7  Agr-Let-7  Asu-Let-7-P5  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cbr-Let-7-P5  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mgi-Let-7  Mom-Let-7  Npo-Let-7  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Chromadorea
Node of Origin (family) Bilateria
Genome context
(ce11)
chrX: 14744191-14744255 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGGUGGACGGUCUACACUGUGGAUCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGAGACAGAACUCUUCGAAGCUGCGUCGUC
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Structure
        10            20        30        40        50        60  
AUUGGUGGACGGUCUACA----|   GGA             U             UGGAAUAUU 
                      CUGU   UCCGGUGAGGUAG AGGUUGUAUAGUU         \
                      GACA   AGGCCAUUCCAUC UUUAACGUAUCAA         A
CUGCUGCGUCGAAGCUUCUCAA^   G--             U             GUGGCCACC 
   120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Let-7-P5_5p

mirBase accessionMIMAT0000001
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Proposed targets microrna.org: MIMAT0000001
TargetScanWorm: cel-let-7
Star sequence

Cel-Let-7-P5_3p*

mirBase accessionMIMAT0015091
Sequence
43- CUAUGCAAUUUUCUACCUUACC -65
Get sequence
Proposed targets microrna.org: MIMAT0015091