MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-788-v2

Family name MIR-788 (all species)
Seed GGAAAUG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-788
Paralogues Cel-Mir-788-v1 
Orthologues Cbr-Mir-788-v2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrX: 8485302-8485361 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-788-v2)		 Mir-788-v1 chrX: 8485301-8485362 [-] UCSC Ensembl
Mir-788-v2 chrX: 8485302-8485361 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUACAAAUUUUCAGCUGGAAGCUCACUUUUCCGCUUCUAACUUCCAUUUGCAGAGUUCAAGUAAUCUGGAAAUGGAUUAGAAUCGUGGAAAAGUUAGUGAAUAGCAGUUUUCAAAAUUGU
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Structure
        10        20          30          40        50         
UUACAAAUUUUCAGCUGGAA--   C          --|     CU       G    GUUC 
                      GCU ACUUUUCCGC  UUCUAA  UCCAUUU CAGA    A
                      UGA UGAAAAGGUG  AAGAUU  AGGUAAA GUCU    A
UGUUAAAACUUUUGACGAUAAG   U          CU^     --       G    AAUG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-788-v2_5p*
mirBase accessionMIMAT0004223
Sequence 
0- CCGCUUCUAACUUCCAUUUGCAGA -24
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Proposed targets microrna.org: MIMAT0004223
TargetScanWorm: cel-miR-788
Mature sequence

Cel-Mir-788-v2_3p
mirBase accessionMIMAT0015240
Sequence 
36- UGGAAAUGGAUUAGAAUCGUGGAA -60
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Proposed targets microrna.org: MIMAT0015240