MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-1502-P1

Family name MIR-1502 (all species)
Seed GAACUUU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1502d
Paralogues Cin-Mir-1502-P2  Cin-Mir-1502-P3  Cin-Mir-1502-P4 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 568849-568908 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1502-P1)		 Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACGUCGACGUGCCCUGCGACUAAAUUCAUGAACUUUCCCAGGAAUAAGUCUUUCUUUGUUAUGUCAGACUUACUCCCGGGAGUUCUCGCCUCUUGUCGUGCUCUCGCCACGUCAUAGC
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Structure
        10          20        30        40        50        60
AUACGUCGACGUGCCCU--|    UAAAUUCAU    UU    A   A       UUCUUU 
                   GCGAC         GAAC  UCCC GGA UAAGUCU      G
                   UGCUG         CUUG  AGGG CCU AUUCAGA      U
CGAUACUGCACCGCUCUCG^    UUCUCCGCU    --    C   C       CUGUAU 
.       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-1502-P1_5p
mirBase accessionMIMAT0016493
Sequence 
0- UGAACUUUCCCAGGAAUAAGUCU -23
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Star sequence

Cin-Mir-1502-P1_3p*
mirBase accessionMIMAT0016494
Sequence 
39- ACUUACUCCCGGGAGUUCUCG -60
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