MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4018-P1

Family name MIR-4018 (all species)
Seed GGAACAU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4018a
Paralogues Cin-Mir-4018-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 568964-569018 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4018-P1)		 Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAGCUACGUCACAAACGACUUUAUGACGUCGGAACAUUGUUGGAACGGGCUGUACGAUCUCAGCUCGCUCCGCAAUGCACCCAAGUCAUUAUGUCACAAGCAUCUCUUCUAUUC
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Structure
        10          20        30        40        50       
AUAGCUACGUCACAAAC--|  UUU     GUC  AA      U   A       UAC 
                   GAC   AUGAC   GG  CAUUGU GGA CGGGCUG   G
                   CUG   UACUG   CC  GUAACG CCU GCUCGAC   A
CUUAUCUUCUCUACGAACA^  UAU     AAC  AC      -   C       UCU 
   110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4018-P1_5p
mirBase accessionMIMAT0016528
Sequence 
0- CGGAACAUUGUUGGAACGGGCUGU -24
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Star sequence

Cin-Mir-4018-P1_3p*
mirBase accessionMIMAT0016529
Sequence 
33- GCUCGCUCCGCAAUGCACCCAA -55
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