Mir-1502-P4

MirGeneDB ID

Cin-Mir-1502-P4

Family name

MIR-1502 (all species)

Seed

GAACUUU

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-1502c

Paralogues

Cin-Mir-1502-P1 Cin-Mir-1502-P2 Cin-Mir-1502-P3

Orthologues

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

C. intestinalis

Genome context
(ci3)

3: 570975-571033 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1502-P4)

Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACACACAACACAGCCAAGCUAAUAAAGUGAUGAACUUUACCAUGAAAAAGCCUGUUAAUUGAAAUGCAGGGUUUUUCAUGGAGUUCGCCAAAGAAAAUAGCUCUUUCAUCGUGAACUAA

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Structure

        10         20         30        40        50        60
ACACACAACACAGCCAA-    AUAAAG-| A      UUA          G     UAAU 
                  GCUA       UG UGAACU   CCAUGAAAAA CCUGU    U
                  CGAU       AC GCUUGA   GGUACUUUUU GGACG    G
AAUCAAGUGCUACUUUCU    AAAAGAA^ C      ---          G     UAAA 
       110       100        90           80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Mature sequence

Cin-Mir-1502-P4_5p

mirBase accession

MIMAT0016491

Sequence

0- UGAACUUUACCAUGAAAAAGCCUGU -25

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Star sequence

Cin-Mir-1502-P4_3p*

mirBase accession

MIMAT0016492

Sequence

37- AGGGUUUUUCAUGGAGUUCGCC -59

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