MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4018-P2

Family name MIR-4018 (all species)
Seed GGAACAU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4018b
Paralogues Cin-Mir-4018-P1 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 569570-569648 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4018-P2)		 Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUAGGCAACCGCUUGGCGUCGCUUUCGAGGAACAUUCUGUGGAACGGGCUGGUUUAAACCGGUCUGAUCCGGUAUUCGGGUUCCAGCUGUUUCACGGCGUUCCAAAAACACGACGACCGCACACAACAACAAAUAU
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Structure
        10          20        30        40        50        60        70
AAAAUAGGCAACCGCUU-  -|    CUUUCGA     AUU           G   GUUUAAACCGGUCUG 
                  GG CGUCG       GGAAC   CUGUGGAACGG CUG               A
                  CC GCAGC       CCUUG   GGCACUUUGUC GAC               U
UAUAAACAACAACACACG  A^    ACAAAAA     C--           -   CUUGGGCUUAUGGCC 
       130       120       110         100        90         80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4018-P2_5p
mirBase accessionMIMAT0016530
Sequence 
0- AGGAACAUUCUGUGGAACGGGCUG -24
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Star sequence

Cin-Mir-4018-P2_3p*
mirBase accessionMIMAT0016531
Sequence 
57- AGCUGUUUCACGGCGUUCCAAA -79
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