| MirGeneDB ID | Cja-Mir-1180 |
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| Family name |
MIR-1180 (all species) |
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| Seed |
UUCCGGC |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Eca-Mir-1180
Hsa-Mir-1180
Mml-Mir-1180
Mmr-Mir-1180
Pab-Mir-1180
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| Node of Origin (locus) |
Boreoeutheria
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| Node of Origin (family) |
Boreoeutheria
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 79252712-79252767 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUCCCGGCGGGGCUAAGCCCGCGGCUGCCGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGUGUGGGUGUGUUGGCGGCGGGGCCUGACACCCCCGGCCUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGUCCCGGCGGGGCUAAG-- G GC G C -| GUGCU
CCCGC GCU CG ACCCAC CG GCCGGGAAUA \
GGGCG CGG GU UGGGUG GC CGGCCUUUGU C
UCUCCGGCCCCCACAGUCCG G UU G U U^ UGGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Cja-Mir-1180_5p* |
| mirBase accession | None |
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| Sequence |
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
|
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| Mature sequence |
Cja-Mir-1180_3p |
| mirBase accession | None |
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| Sequence |
34- UUUCCGGCUCGUGUGGGUGUGU -56
Get sequence
|
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