| MirGeneDB ID | Cja-Mir-1180 |
|---|---|
| Family name | MIR-1180 (all species) |
| Seed | UUCCGGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Eca-Mir-1180 Hsa-Mir-1180 Mml-Mir-1180 Mmr-Mir-1180 Pab-Mir-1180 |
| Node of Origin (locus) | Boreoeutheria |
| Node of Origin (family) | Boreoeutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 79252712-79252767 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGUCCCGGCGGGGCUAAGCCCGCGGCUGCCGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGUGUGGGUGUGUUGGCGGCGGGGCCUGACACCCCCGGCCUCUGet precursor sequence |
| Structure | 10 20 30 40 50 AGUCCCGGCGGGGCUAAG-- G GC G C -| GUGCU CCCGC GCU CG ACCCAC CG GCCGGGAAUA \ GGGCG CGG GU UGGGUG GC CGGCCUUUGU C UCUCCGGCCCCCACAGUCCG G UU G U U^ UGGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Cja-Mir-1180_5p* |
| mirBase accession | None |
| Sequence |
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
|
| Mature sequence | Cja-Mir-1180_3p |
| mirBase accession | None |
| Sequence |
34- UUUCCGGCUCGUGUGGGUGUGU -56
Get sequence
|
