| MirGeneDB ID | Pab-Mir-1180 |
|---|---|
| Family name | MIR-1180 (all species) |
| Seed | UUCCGGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-1180 Eca-Mir-1180 Hsa-Mir-1180 Mml-Mir-1180 Mmr-Mir-1180 |
| Node of Origin (locus) | Boreoeutheria |
| Node of Origin (family) | Boreoeutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 20564608-20564663 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGUCCCGGCGGGGCGAAGCCCGCGGCUGCUGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGCGUGGGUGUGUCGGCGGCGGGGCCUGACACCCCCGGCCUCCGet precursor sequence |
| Structure | 10 20 30 40 50 AGUCCCGGCGGGGCGAAG-- G C G C -| GUGCU CCCGC GCUG UG ACCCAC CG GCCGGGAAUA \ GGGCG CGGC GU UGGGUG GC CGGCCUUUGU C CCUCCGGCCCCCACAGUCCG G U G C U^ UGGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Pab-Mir-1180_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
|
| Mature sequence | Pab-Mir-1180_3p |
| mirBase accession | None |
| Sequence |
34- UUUCCGGCUCGCGUGGGUGUGU -56
Get sequence
|
