| MirGeneDB ID | Pab-Mir-1180 |
|---|
| Family name |
MIR-1180 (all species) |
|---|
| Seed |
UUCCGGC |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cja-Mir-1180
Eca-Mir-1180
Hsa-Mir-1180
Mml-Mir-1180
Mmr-Mir-1180
|
|---|
| Node of Origin (locus) |
Boreoeutheria
|
|---|
| Node of Origin (family) |
Boreoeutheria
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 20564608-20564663 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGUCCCGGCGGGGCGAAGCCCGCGGCUGCUGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGCGUGGGUGUGUCGGCGGCGGGGCCUGACACCCCCGGCCUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUCCCGGCGGGGCGAAG-- G C G C -| GUGCU
CCCGC GCUG UG ACCCAC CG GCCGGGAAUA \
GGGCG CGGC GU UGGGUG GC CGGCCUUUGU C
CCUCCGGCCCCCACAGUCCG G U G C U^ UGGUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pab-Mir-1180_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-1180_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUUCCGGCUCGCGUGGGUGUGU -56
Get sequence
|
|---|
