MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-1180

Family name MIR-1180 (all species)
Seed UUCCGGC
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues
Orthologues Cja-Mir-1180  Eca-Mir-1180  Hsa-Mir-1180  Mml-Mir-1180  Pab-Mir-1180 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007676.1: 60731254-60731309 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCCCGCCAGGGCGAAGCCCGCGGCUGCCGGACCCACCCGGCCGGGAAUAGUGCACCGUCUUCUUUCCGGCUCGAGUGGGUGUGUCGGAGGCGUGGCCUGGACGCCAGUCCCUGG
Get precursor sequence
Structure
        10         20         30        40         50       
UUGCCCGCCAGGGCGAA-   -   GG   C  G      C  -|       UAGUGCA 
                  GCC CGC  CUG CG ACCCAC CG GCCGGGAA       \
                  CGG GCG  GGC GU UGGGUG GC CGGCCUUU       C
GGUCCCUGACCGCAGGUC   U   GA   U  G      A  U^       CUUCUGC 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-1180_5p* (predicted)

mirBase accessionNone
Sequence
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
Mature sequence

Mmr-Mir-1180_3p

mirBase accessionNone
Sequence
34- UUUCCGGCUCGAGUGGGUGUGU -56
Get sequence