| MirGeneDB ID | Cja-Mir-1296 |
|---|---|
| Family name | MIR-1296 (all species) |
| Seed | UAGGGCC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1296 Cfa-Mir-1296 Cpo-Mir-1296 Dno-Mir-1296 Eca-Mir-1296 Ete-Mir-1296 Hsa-Mir-1296 Laf-Mir-1296 Mml-Mir-1296 Mmr-Mir-1296 Ocu-Mir-1296 Pab-Mir-1296 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 63683976-63684040 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAAAUCAACGAAUCACCUACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUCGACCCUAACCCAGGUGGGCUGUAACACUGCUGUAUUUUCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGAAAUCAACGAAUCACCUA--| A CCCU U UUUAGGAAA CCUA CUGGGUUAGGG GGCUCCA CUCC A GGGU GACCCAAUCCC UCGGGGU GAGG C UCUUUUAUGUCGUCACAAUGUC^ G AGCU - GGUGUCUUC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-1296_5p |
| mirBase accession | None |
| Sequence |
0- UUAGGGCCCUGGCUCCAUCUCC -22
Get sequence
|
| Star sequence | Cja-Mir-1296_3p* (predicted) |
| mirBase accession | None |
| Sequence |
44- AGUGGGGCUUCGACCCUAACC -65
Get sequence
|
