| MirGeneDB ID | Laf-Mir-1296 |
|---|---|
| Family name | MIR-1296 (all species) |
| Seed | UAGGGCC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1296 Cfa-Mir-1296 Cja-Mir-1296 Cpo-Mir-1296 Dno-Mir-1296 Eca-Mir-1296 Ete-Mir-1296 Hsa-Mir-1296 Mml-Mir-1296 Mmr-Mir-1296 Ocu-Mir-1296 Pab-Mir-1296 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010037.1: 44969501-44969565 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAAAUCACCGAAUCACCUGCCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUUGACCCUAACCCAGCUGGGCUGUAACACUGCUGCAUUUUCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGAAAUCACCGAAUCACCU-- A CCCU -| UUUAGGAA GCCUA CUGGGUUAGGG GGCUCCA UCUCC A CGGGU GACCCAAUCCC UCGGGGU AGGGG A UCUUUUACGUCGUCACAAUGU C AGUU G^ UGUCUUCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-1296_5p |
| mirBase accession | None |
| Sequence |
0- UUAGGGCCCUGGCUCCAUCUCC -22
Get sequence
|
| Star sequence | Laf-Mir-1296_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- GAGUGGGGCUUUGACCCUAACC -65
Get sequence
|
