MirGeneDB ID | Pab-Mir-1296 |
---|---|
Family name | MIR-1296 (all species) |
Seed | UAGGGCC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-1296 Cfa-Mir-1296 Cja-Mir-1296 Cpo-Mir-1296 Dno-Mir-1296 Eca-Mir-1296 Ete-Mir-1296 Hsa-Mir-1296 Laf-Mir-1296 Mml-Mir-1296 Mmr-Mir-1296 Ocu-Mir-1296 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054687.2: 80862708-80862772 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGAAAUCAACGAAUCACCUACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUCGACCCUAACCCAGGUGGGCUGUAACACUGCUGUAUUUUCUGet precursor sequence |
Structure | 10 20 30 40 50 60 UGAAAUCAACGAAUCACCUA--| A CCCU U UUUAGGAAA CCUA CUGGGUUAGGG GGCUCCA CUCC A GGGU GACCCAAUCCC UCGGGGU GAGG C UCUUUUAUGUCGUCACAAUGUC^ G AGCU - GGUGUCUUC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-1296_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUAGGGCCCUGGCUCCAUCUCC -22
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|
Star sequence | Pab-Mir-1296_3p* (predicted) |
mirBase accession | None |
Sequence |
44- AGUGGGGCUUCGACCCUAACC -65
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