| MirGeneDB ID | Eca-Mir-1296 |
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| Family name |
MIR-1296 (all species) |
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| Seed |
UAGGGCC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-1296
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| Paralogues |
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| Orthologues |
Bta-Mir-1296
Cfa-Mir-1296
Cja-Mir-1296
Cpo-Mir-1296
Dno-Mir-1296
Ete-Mir-1296
Hsa-Mir-1296
Laf-Mir-1296
Mml-Mir-1296
Mmr-Mir-1296
Ocu-Mir-1296
Pab-Mir-1296
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 52846600-52846664 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAAUCAACGAAUCACCUACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUUUGGGGAGUGGGGCUUCGACCCUAACCCAGCUGGGCUGUAACACUGCUGCAUUUUCU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UGAAAUCAACGAAUCACCUA--| A CCCU U UUAGGAAA
CCUA CUGGGUUAGGG GGCUCCA CUCCU A
GGGU GACCCAAUCCC UCGGGGU GAGGG C
UCUUUUACGUCGUCACAAUGUC^ C AGCU - GUUUCUUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-1296_5p |
| mirBase accession | MIMAT0012890 |
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| Sequence |
0- UUAGGGCCCUGGCUCCAUCUCCU -23
Get sequence
|
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| Star sequence |
Eca-Mir-1296_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
44- AGUGGGGCUUCGACCCUAACC -65
Get sequence
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