MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-374-P2

Family name MIR-374 (all species)
Seed UAUAAUA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-374-P1 
Orthologues Bta-Mir-374-P2  Cfa-Mir-374-P2  Eca-Mir-374-P2  Hsa-Mir-374-P2  Laf-Mir-374-P2  Mml-Mir-374-P2  Mmu-Mir-374-P2  Ocu-Mir-374-P2  Pab-Mir-374-P2  Rno-Mir-374-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021937.1: 68669479-68669530 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCCUCUGAAGAAAUCCUACUCGGAUGGAUAUAAUACAACCUGCUAAGUGUCCUAGCACUUAGCAGGUUGUAUUAUCAUUGUCCGUGUCUAUGGCUCUCGUCUACCAGAC
Get precursor sequence
Structure
        10        20          30        40        50     
UGCUCCUCUGAAGAAAUCCU--| U    UG AU                    UC 
                      AC CGGA  G  AUAAUACAACCUGCUAAGUG  C
                      UG GCCU  U  UAUUAUGUUGGACGAUUCAC  U
CAGACCAUCUGCUCUCGGUAUC^ U    GU AC                    GA 
110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Cja-Mir-374-P2_5p

mirBase accessionNone
Sequence
0- AUAUAAUACAACCUGCUAAGUG -22
Get sequence
Star sequence

Cja-Mir-374-P2_3p* (predicted)

mirBase accessionNone
Sequence
30- CUUAGCAGGUUGUAUUAUCAUU -52
Get sequence