MirGeneDB ID | Cja-Mir-374-P2 |
---|---|
Family name | MIR-374 (all species) |
Seed | UAUAAUA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-374-P1 |
Orthologues | Bta-Mir-374-P2 Cfa-Mir-374-P2 Eca-Mir-374-P2 Hsa-Mir-374-P2 Laf-Mir-374-P2 Mml-Mir-374-P2 Mmu-Mir-374-P2 Ocu-Mir-374-P2 Pab-Mir-374-P2 Rno-Mir-374-P2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 68669479-68669530 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGCUCCUCUGAAGAAAUCCUACUCGGAUGGAUAUAAUACAACCUGCUAAGUGUCCUAGCACUUAGCAGGUUGUAUUAUCAUUGUCCGUGUCUAUGGCUCUCGUCUACCAGACGet precursor sequence |
Structure | 10 20 30 40 50 UGCUCCUCUGAAGAAAUCCU--| U UG AU UC AC CGGA G AUAAUACAACCUGCUAAGUG C UG GCCU U UAUUAUGUUGGACGAUUCAC U CAGACCAUCUGCUCUCGGUAUC^ U GU AC GA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Cja-Mir-374-P2_5p |
mirBase accession | None |
Sequence |
0- AUAUAAUACAACCUGCUAAGUG -22
Get sequence
|
Star sequence | Cja-Mir-374-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
30- CUUAGCAGGUUGUAUUAUCAUU -52
Get sequence
|