MirGeneDB ID | Cja-Mir-423 |
---|---|
Family name | MIR-423 (all species) |
Seed | GAGGGGC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-423 Cfa-Mir-423 Cpo-Mir-423 Dno-Mir-423 Eca-Mir-423 Ete-Mir-423 Hsa-Mir-423 Laf-Mir-423 Mml-Mir-423 Mmr-Mir-423 Mmu-Mir-423 Ocu-Mir-423 Pab-Mir-423 Rno-Mir-423 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 99560869-99560927 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AAACUUGUGAGGAAAUAAAGGAAGUUAGGCUGAGGGGCAGAGAGCGAGACUUUUCUAUUUUCCAAAAGCUCGGUCUGAGGCCCCUCAGUCUUGCUUCCUACCCCGCGCUUGAGUUUCUCGet precursor sequence |
Structure | 10 20 30 40 50 AAACUUGUGAGGAAAUAA-- U AG-| G A UCUAU AGGAAGU AGGCUGAGGGGC AGA CGAG CUUU \ UCCUUCG UCUGACUCCCCG UCU GCUC GAAA U CUCUUUGAGUUCGCGCCCCA U GAG^ G - ACCUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Cja-Mir-423_5p |
mirBase accession | None |
Sequence |
0- UGAGGGGCAGAGAGCGAGACUUU -23
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|
Star sequence | Cja-Mir-423_3p* |
mirBase accession | None |
Sequence |
36- AGCUCGGUCUGAGGCCCCUCAGU -59
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