MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-423

Family name MIR-423 (all species)
Seed GCUCGGU
Species Horse (Equus caballus)
MiRBase ID eca-mir-423
Paralogues
Orthologues Bta-Mir-423  Cfa-Mir-423  Cja-Mir-423  Cpo-Mir-423  Dno-Mir-423  Ete-Mir-423  Hsa-Mir-423  Laf-Mir-423  Mml-Mir-423  Mmr-Mir-423  Mmu-Mir-423  Ocu-Mir-423  Pab-Mir-423  Rno-Mir-423 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009158.1: 44106242-44106300 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAACUUGUGAGGAAAUAAAGGAAGUUAGGCUGAGGGGCAGAGAGCGAGACUUUUCUAUUUUCCAAAAGCUCGGUCUGAGGCCCCUCAGUCUUGCUUCCUACCCCGCGCUUCAGUUUCUC
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Structure
        10          20        30        40         50         
AAACUUGUGAGGAAAUAA--       U            AG-|  G    A    UCUAU 
                    AGGAAGU AGGCUGAGGGGC   AGA CGAG CUUU     \
                    UCCUUCG UCUGACUCCCCG   UCU GCUC GAAA     U
CUCUUUGACUUCGCGCCCCA       U            GAG^  G    -    ACCUU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-423_5p*

mirBase accessionMIMAT0013039
Sequence
0- UGAGGGGCAGAGAGCGAGACUUU -23
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Mature sequence

Eca-Mir-423_3p

mirBase accessionMIMAT0013040
Sequence
36- AGCUCGGUCUGAGGCCCCUCAGU -59
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