MirGeneDB ID | Cja-Mir-450-P3 |
---|---|
Family name | MIR-450 (all species) |
Seed | UUUGCAA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-450-P1 Cja-Mir-450-P2 |
Orthologues | Bta-Mir-450-P3 Cfa-Mir-450-P3 Cpo-Mir-450-P3 Dno-Mir-450-P3 Eca-Mir-450-P3 Hsa-Mir-450-P3 Laf-Mir-450-P3 Mml-Mir-450-P3 Mmr-Mir-450-P3 Mmu-Mir-450-P3 Ocu-Mir-450-P3 Pab-Mir-450-P3 Rno-Mir-450-P3a Rno-Mir-450-P3b |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 126002103-126002160 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUCUGUGAUAAACAUAAGAUGCAGAAUUAUUUUUGCAAUUUGUUCCUGAAUAUAUAAUAAAGUGUAUUGGGAUCAUUUUGCAUCCAUAGUUUUGUAUCAAAACUUGCAACAAUGUUGUGet precursor sequence |
Structure | 10 20 30 40 50 UUCUGUGAUAAACAUAA--- UUU UU U UG -| AUA GAUGCAGAAUUAU UGCAA UG UCC A AUAU A CUAUGUUUUGAUA ACGUU AC AGG U UGUG U UGUUGUAACAACGUUCAAAA CCU UU U GU A^ AAA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Cja-Mir-450-P3_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUUGCAAUUUGUUCCUGAAUAU -23
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|
Star sequence | Cja-Mir-450-P3_3p* (predicted) |
mirBase accession | None |
Sequence |
34- UAUUGGGAUCAUUUUGCAUCCAUA -58
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|