MirGeneDB ID | Cja-Mir-450-P3 |
Family name |
MIR-450 (all species) |
Seed |
UUUGCAA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-450-P1
Cja-Mir-450-P2
|
Orthologues |
Bta-Mir-450-P3
Cfa-Mir-450-P3
Cpo-Mir-450-P3
Dno-Mir-450-P3
Eca-Mir-450-P3
Hsa-Mir-450-P3
Laf-Mir-450-P3
Mml-Mir-450-P3
Mmr-Mir-450-P3
Mmu-Mir-450-P3
Ocu-Mir-450-P3
Pab-Mir-450-P3
Rno-Mir-450-P3a
Rno-Mir-450-P3b
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 126002103-126002160 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUGUGAUAAACAUAAGAUGCAGAAUUAUUUUUGCAAUUUGUUCCUGAAUAUAUAAUAAAGUGUAUUGGGAUCAUUUUGCAUCCAUAGUUUUGUAUCAAAACUUGCAACAAUGUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUGUGAUAAACAUAA--- UUU UU U UG -| AUA
GAUGCAGAAUUAU UGCAA UG UCC A AUAU A
CUAUGUUUUGAUA ACGUU AC AGG U UGUG U
UGUUGUAACAACGUUCAAAA CCU UU U GU A^ AAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-450-P3_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUUGCAAUUUGUUCCUGAAUAU -23
Get sequence
|
Star sequence |
Cja-Mir-450-P3_3p* (predicted) |
mirBase accession | None |
Sequence |
34- UAUUGGGAUCAUUUUGCAUCCAUA -58
Get sequence
|