MirGeneDB ID | Cja-Mir-450-P1 |
Family name |
MIR-450 (all species) |
Seed |
UUUGCGA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-450-P2
Cja-Mir-450-P3
|
Orthologues |
Bta-Mir-450-P1
Cfa-Mir-450-P1
Cpo-Mir-450-P1
Dno-Mir-450-P1
Eca-Mir-450-P1
Hsa-Mir-450-P1
Laf-Mir-450-P1
Mml-Mir-450-P1
Mmr-Mir-450-P1
Mmu-Mir-450-P1
Ocu-Mir-450-P1
Pab-Mir-450-P1
Rno-Mir-450-P1a
Rno-Mir-450-P1b
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 126002435-126002491 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAGUGACCAAGGAAAGAUGCUGAACUAUUUUUGCGAAGUGUUCCUAAUAUGUAAUAUAAAUGUAUUGGGGACAUUUUGCAAUCAUAGUUUUGUAUCAAUAAUAUUGGAAAAAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAAGUGACCAAGGAAA--| U UU GUAAU
GAUGC GAACUAU UUGCGAAGUGUUCCUAAUAU \
CUAUG UUUGAUA AACGUUUUACAGGGGUUAUG A
GAAAAAAAGGUUAUAAUAA^ U CU UAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-450-P1_5p |
mirBase accession | None |
Sequence |
0- UUUUGCGAAGUGUUCCUAAUAU -22
Get sequence
|
Star sequence |
Cja-Mir-450-P1_3p* |
mirBase accession | None |
Sequence |
35- AUUGGGGACAUUUUGCAAUCAU -57
Get sequence
|