| MirGeneDB ID | Pab-Mir-450-P1 |
|---|---|
| Family name | MIR-450 (all species) |
| Seed | UUUUGCG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-450-P2 Pab-Mir-450-P3 |
| Orthologues | Bta-Mir-450-P1 Cfa-Mir-450-P1 Cja-Mir-450-P1 Cpo-Mir-450-P1 Dno-Mir-450-P1 Eca-Mir-450-P1 Hsa-Mir-450-P1 Laf-Mir-450-P1 Mml-Mir-450-P1 Mmr-Mir-450-P1 Mmu-Mir-450-P1 Ocu-Mir-450-P1 Rno-Mir-450-P1a Rno-Mir-450-P1b |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140562101-140562158 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAAAGGUGACCAAAGAAAGAUGCUAAACUAUUUUUGCGAUGUGUUCCUAAUACGUAAUAUAAAUGUAUUGGGGACAUUUUGCAUUCAUAGUUUUGUAUCAAUGAUAUGGGGAAAAGAGGet precursor sequence |
| Structure | 10 20 30 40 50 UAAAGGUGACCAAAGAAA-| U UUU U GUAAU GAUGC AAACUAU UGCGA GUGUUCCUAAUAC \ CUAUG UUUGAUA ACGUU UACAGGGGUUAUG A GAGAAAAGGGGUAUAGUAA^ U CUU U UAAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Dicer cut - 1 on both arms. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Pab-Mir-450-P1_5p |
| mirBase accession | None |
| Sequence |
0- UUUUUGCGAUGUGUUCCUAAUAC -23
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|
| Star sequence | Pab-Mir-450-P1_3p* |
| mirBase accession | None |
| Sequence |
36- AUUGGGGACAUUUUGCAUUCAU -58
Get sequence
|
