MirGeneDB ID | Pab-Mir-450-P1 |
Family name |
MIR-450 (all species) |
Seed |
UUUUGCG |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-450-P2
Pab-Mir-450-P3
|
Orthologues |
Bta-Mir-450-P1
Cfa-Mir-450-P1
Cja-Mir-450-P1
Cpo-Mir-450-P1
Dno-Mir-450-P1
Eca-Mir-450-P1
Hsa-Mir-450-P1
Laf-Mir-450-P1
Mml-Mir-450-P1
Mmr-Mir-450-P1
Mmu-Mir-450-P1
Ocu-Mir-450-P1
Rno-Mir-450-P1a
Rno-Mir-450-P1b
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140562101-140562158 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAAGGUGACCAAAGAAAGAUGCUAAACUAUUUUUGCGAUGUGUUCCUAAUACGUAAUAUAAAUGUAUUGGGGACAUUUUGCAUUCAUAGUUUUGUAUCAAUGAUAUGGGGAAAAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAAGGUGACCAAAGAAA-| U UUU U GUAAU
GAUGC AAACUAU UGCGA GUGUUCCUAAUAC \
CUAUG UUUGAUA ACGUU UACAGGGGUUAUG A
GAGAAAAGGGGUAUAGUAA^ U CUU U UAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut - 1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-450-P1_5p |
mirBase accession | None |
Sequence |
0- UUUUUGCGAUGUGUUCCUAAUAC -23
Get sequence
|
Star sequence |
Pab-Mir-450-P1_3p* |
mirBase accession | None |
Sequence |
36- AUUGGGGACAUUUUGCAUUCAU -58
Get sequence
|