MirGeneDB ID | Pab-Mir-450-P2 |
Family name |
MIR-450 (all species) |
Seed |
UUUGCGA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-450-P1
Pab-Mir-450-P3
|
Orthologues |
Bta-Mir-450-P2
Cfa-Mir-450-P2
Cja-Mir-450-P2
Cpo-Mir-450-P2
Dno-Mir-450-P2
Eca-Mir-450-P2
Hsa-Mir-450-P2
Laf-Mir-450-P2
Mml-Mir-450-P2
Mmr-Mir-450-P2
Mmu-Mir-450-P2
Ocu-Mir-450-P2
Rno-Mir-450-P2a
Rno-Mir-450-P2b
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140561930-140561986 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUAGGCAAUCAAAAACGAUACUAAACUGUUUUUGCGAUGUGUUCCUAAUAUGCACAAUAAAUAUAUUGGGAACAUUUUGCAUGUAUAGUUUGGUAUCAAUAUACAGAUGAAAAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUAGGCAAUCAAAAAC--| UUU U GCACA
GAUACUAAACUGU UGCGA GUGUUCCUAAUAU \
CUAUGGUUUGAUA ACGUU UACAAGGGUUAUA A
UAGAAAAGUAGACAUAUAA^ UGU U UAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-450-P2_5p |
mirBase accession | None |
Sequence |
0- UUUUGCGAUGUGUUCCUAAUAU -22
Get sequence
|
Star sequence |
Pab-Mir-450-P2_3p* |
mirBase accession | None |
Sequence |
35- AUUGGGAACAUUUUGCAUGUAU -57
Get sequence
|