| MirGeneDB ID | Cja-Mir-598 |
|---|---|
| Family name | MIR-598 (all species) |
| Seed | ACGUCAU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cpo-Mir-598 Ete-Mir-598 Hsa-Mir-598 Laf-Mir-598 Mml-Mir-598 Mmr-Mir-598 Mmu-Mir-598 Pab-Mir-598 Rno-Mir-598-P1 Rno-Mir-598-P2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 7905371-7905429 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAAGAUGGCUUGAUGAUGCUGCUGAUGCUGGCGGUGAUGCCGAUGGUGUGAGCUGGAAAUGGGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCCGAGCAGCCACCAGAUAGCGet precursor sequence |
| Structure | 10 20 30 40 50 GAAGAUGGCUUGAUGAUGC--| C C GC GU G UGGAA UG UGAUG UGGCGGUGAU CGAUG GU AGC A AC ACUAC ACUGCUACUG GCUAC CA UCG U CGAUAGACCACCGACGAGCCU^ U U UU UG - UGGGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-598_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCGGUGAUGCCGAUGGUGUGAGC -23
Get sequence
|
| Mature sequence | Cja-Mir-598_3p |
| mirBase accession | None |
| Sequence |
37- UACGUCAUCGUUGUCAUCGUCA -59
Get sequence
|
