MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-598

Family name MIR-598 (all species)
Seed ACGUCAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Cpo-Mir-598  Ete-Mir-598  Hsa-Mir-598  Laf-Mir-598  Mml-Mir-598  Mmr-Mir-598  Mmu-Mir-598  Pab-Mir-598  Rno-Mir-598-P1  Rno-Mir-598-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021927.1: 7905371-7905429 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUGGCUUGAUGAUGCUGCUGAUGCUGGCGGUGAUGCCGAUGGUGUGAGCUGGAAAUGGGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCCGAGCAGCCACCAGAUAGC
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Structure
        10          20        30        40        50         
GAAGAUGGCUUGAUGAUGC--| C     C          GC     GU  G   UGGAA 
                     UG UGAUG UGGCGGUGAU  CGAUG  GU AGC     A
                     AC ACUAC ACUGCUACUG  GCUAC  CA UCG     U
CGAUAGACCACCGACGAGCCU^ U     U          UU     UG  -   UGGGG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-598_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGGUGAUGCCGAUGGUGUGAGC -23
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Mature sequence

Cja-Mir-598_3p

mirBase accessionNone
Sequence
37- UACGUCAUCGUUGUCAUCGUCA -59
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