MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-598

Family name MIR-598 (all species)
Seed ACGUCAU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Cja-Mir-598  Cpo-Mir-598  Hsa-Mir-598  Laf-Mir-598  Mml-Mir-598  Mmr-Mir-598  Mmu-Mir-598  Pab-Mir-598  Rno-Mir-598-P1  Rno-Mir-598-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980320: 20285247-20285304 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAAGAUGGUUUGAUGAUACUGCUGAUGCUGGUGGUGAUGCCGAUGGUGUGAGCUGGAAAUGGGUGCUACGUCAUCGUUGUCAUCGUCGUCAUCAUCAUCCGAGCAGCCACCGUGUAGC
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Structure
        10          20        30        40        50         
GAAGAUGGUUUGAUGAUAC--| C     C  GU      GC     GU  G   UGGAA 
                     UG UGAUG UG  GGUGAU  CGAUG  GU AGC     \
                     AC ACUAC GC  CUACUG  GCUAC  CA UCG     A
CGAUGUGCCACCGACGAGCCU^ U     U  UG      UU     UG  -   UGGGU 
      110       100        90        80        70         60
Deep sequencing
CommentThere are two nt differences between the genomic read and the actual 3p read from the small RNA library (UACGUCAUCGUUGUCAUUGUCA).
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Mir-598_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGGUGAUGCCGAUGGUGUGAGC -23
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Mature sequence

Ete-Mir-598_3p

mirBase accessionNone
Sequence
36- UACGUCAUCGUUGUCAUCGUCG -58
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